Kibdelin B

Details

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Internal ID 5103afb9-1ab7-408e-bd9c-91505936fc2f
Taxonomy Organic acids and derivatives > Carboxylic acids and derivatives > Amino acids, peptides, and analogues > Peptides > Oligopeptides
IUPAC Name 5,15,32,65-tetrachloro-64-[4,5-dihydroxy-3-(hydroxymethyl)-6-(9-methyldecanoylamino)oxan-2-yl]oxy-2,18,26,31,44,49-hexahydroxy-22-(methylamino)-21,35,38,54,56,59-hexaoxo-47-[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy-7,13,28-trioxa-20,36,39,53,55,58-hexazaundecacyclo[38.14.2.23,6.214,17.219,34.18,12.123,27.129,33.141,45.010,37.046,51]hexahexaconta-3,5,8,10,12(64),14,16,23(61),24,26,29(60),30,32,41(57),42,44,46(51),47,49,62,65-henicosaene-52-carboxylic acid
SMILES (Canonical)
SMILES (Isomeric)
InChI InChI=1S/C82H86Cl4N8O29/c1-30(2)9-7-5-4-6-8-10-54(101)88-79-69(107)66(104)41(28-95)81(123-79)122-72-51-22-34-23-52(72)119-71-43(84)19-35(20-44(71)85)65(103)63-78(114)92-61(80(115)116)39-24-36(97)25-50(120-82-70(108)68(106)67(105)53(29-96)121-82)55(39)38-17-31(11-14-45(38)98)58(74(110)94-63)89-75(111)59(34)90-76(112)60-40-26-37(27-47(100)56(40)86)117-49-21-32(12-15-46(49)99)57(87-3)73(109)93-62(77(113)91-60)64(102)33-13-16-48(118-51)42(83)18-33/h11-27,30,41,53,57-70,79,81-82,87,95-100,102-108H,4-10,28-29H2,1-3H3,(H,88,101)(H,89,111)(H,90,112)(H,91,113)(H,92,114)(H,93,109)(H,94,110)(H,115,116)
InChI Key ZEWPEKFPIQQXCA-UHFFFAOYSA-N
Popularity 3 references in papers

Physical and Chemical Properties

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Molecular Formula C82H86Cl4N8O29
Molecular Weight 1789.40 g/mol
Exact Mass 1788.422529 g/mol
Topological Polar Surface Area (TPSA) 581.00 Ų
XlogP 3.30
Atomic LogP (AlogP) 4.71
H-Bond Acceptor 29
H-Bond Donor 22
Rotatable Bonds 17

Synonyms

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103528-49-0
Ristomycin A aglycone, 5,22,31,55-tetrachloro-7-demethyl-64-O-demethyl-56-O-(2-deoxy-2-((9-methyl-1-oxodecyl)amino)-beta-D-glucopyranosyl)-42-O-alpha-D-mannopyranosyl-N15-methyl-

2D Structure

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2D Structure of Kibdelin B

3D Structure

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ADMET Properties (via admetSAR 2)

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Target Value Probability (raw) Probability (%)
Human Intestinal Absorption + 0.6455 64.55%
Caco-2 - 0.8578 85.78%
Blood Brain Barrier - 0.8750 87.50%
Human oral bioavailability - 0.7571 75.71%
Subcellular localzation Nucleus 0.4845 48.45%
OATP2B1 inhibitior - 1.0000 100.00%
OATP1B1 inhibitior + 0.8212 82.12%
OATP1B3 inhibitior + 0.9157 91.57%
MATE1 inhibitior - 0.8800 88.00%
OCT2 inhibitior - 0.9500 95.00%
BSEP inhibitior + 0.9681 96.81%
P-glycoprotein inhibitior + 0.7418 74.18%
P-glycoprotein substrate + 0.8226 82.26%
CYP3A4 substrate + 0.7605 76.05%
CYP2C9 substrate - 1.0000 100.00%
CYP2D6 substrate - 0.8439 84.39%
CYP3A4 inhibition - 0.5666 56.66%
CYP2C9 inhibition - 0.8382 83.82%
CYP2C19 inhibition - 0.7895 78.95%
CYP2D6 inhibition - 0.8701 87.01%
CYP1A2 inhibition - 0.8664 86.64%
CYP2C8 inhibition + 0.8692 86.92%
CYP inhibitory promiscuity - 0.7890 78.90%
UGT catelyzed + 0.8000 80.00%
Carcinogenicity (binary) - 0.7300 73.00%
Carcinogenicity (trinary) Non-required 0.5574 55.74%
Eye corrosion - 0.9860 98.60%
Eye irritation - 0.8955 89.55%
Skin irritation - 0.7655 76.55%
Skin corrosion - 0.9318 93.18%
Ames mutagenesis - 0.5600 56.00%
Human Ether-a-go-go-Related Gene inhibition + 0.7374 73.74%
Micronuclear + 0.8100 81.00%
Hepatotoxicity + 0.5229 52.29%
skin sensitisation - 0.8662 86.62%
Respiratory toxicity + 0.7556 75.56%
Reproductive toxicity + 0.9333 93.33%
Mitochondrial toxicity + 0.8750 87.50%
Nephrotoxicity + 0.6089 60.89%
Acute Oral Toxicity (c) III 0.6514 65.14%
Estrogen receptor binding + 0.5545 55.45%
Androgen receptor binding + 0.7558 75.58%
Thyroid receptor binding + 0.8279 82.79%
Glucocorticoid receptor binding + 0.8174 81.74%
Aromatase binding + 0.7476 74.76%
PPAR gamma + 0.7876 78.76%
Honey bee toxicity - 0.6261 62.61%
Biodegradation - 0.8000 80.00%
Crustacea aquatic toxicity + 0.5100 51.00%
Fish aquatic toxicity + 0.9356 93.56%

Targets

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Proven Targets:

CHEMBL ID UniProt ID Name Min activity Assay type Source
No proven targets yet!

Predicted Targets (via Super-PRED):

CHEMBL ID UniProt ID Name Probability Model accuracy
CHEMBL5619 P27695 DNA-(apurinic or apyrimidinic site) lyase 99.91% 91.11%
CHEMBL2581 P07339 Cathepsin D 99.77% 98.95%
CHEMBL220 P22303 Acetylcholinesterase 99.41% 94.45%
CHEMBL4203 Q9HAZ1 Dual specificity protein kinase CLK4 98.78% 94.45%
CHEMBL3060 Q9Y345 Glycine transporter 2 97.97% 99.17%
CHEMBL5852 Q96P65 Pyroglutamylated RFamide peptide receptor 96.19% 85.00%
CHEMBL1860 P10827 Thyroid hormone receptor alpha 96.12% 99.15%
CHEMBL3251 P19838 Nuclear factor NF-kappa-B p105 subunit 95.05% 96.09%
CHEMBL3976 Q9UHL4 Dipeptidyl peptidase II 94.95% 92.29%
CHEMBL3137262 O60341 LSD1/CoREST complex 94.44% 97.09%
CHEMBL1806 P11388 DNA topoisomerase II alpha 94.20% 89.00%
CHEMBL3401 O75469 Pregnane X receptor 94.13% 94.73%
CHEMBL3108638 O15164 Transcription intermediary factor 1-alpha 91.91% 95.56%
CHEMBL2179 P04062 Beta-glucocerebrosidase 91.85% 85.31%
CHEMBL3359 P21462 Formyl peptide receptor 1 91.64% 93.56%
CHEMBL1163125 O60885 Bromodomain-containing protein 4 90.37% 97.31%
CHEMBL5845 P23415 Glycine receptor subunit alpha-1 89.82% 90.71%
CHEMBL225 P28335 Serotonin 2c (5-HT2c) receptor 89.75% 89.62%
CHEMBL2413 P32246 C-C chemokine receptor type 1 88.93% 89.50%
CHEMBL2716 Q8WUI4 Histone deacetylase 7 88.31% 89.44%
CHEMBL2535 P11166 Glucose transporter 87.75% 98.75%
CHEMBL3880 P07900 Heat shock protein HSP 90-alpha 86.18% 96.21%
CHEMBL4208 P20618 Proteasome component C5 85.90% 90.00%
CHEMBL5163 Q9NY46 Sodium channel protein type III alpha subunit 85.88% 96.90%
CHEMBL3267 P48736 PI3-kinase p110-gamma subunit 85.83% 95.71%
CHEMBL5255 O00206 Toll-like receptor 4 85.58% 92.50%
CHEMBL2563 Q9UQL6 Histone deacetylase 5 85.25% 89.67%
CHEMBL5957 P21589 5'-nucleotidase 85.12% 97.78%
CHEMBL3130 O00329 PI3-kinase p110-delta subunit 84.73% 96.47%
CHEMBL222 P23975 Norepinephrine transporter 84.72% 96.06%
CHEMBL2335 P42785 Lysosomal Pro-X carboxypeptidase 83.48% 100.00%
CHEMBL213 P08588 Beta-1 adrenergic receptor 83.18% 95.56%
CHEMBL5608 Q16288 NT-3 growth factor receptor 82.76% 95.89%
CHEMBL3437 Q16853 Amine oxidase, copper containing 82.63% 94.00%
CHEMBL340 P08684 Cytochrome P450 3A4 82.60% 91.19%
CHEMBL4793 Q86TI2 Dipeptidyl peptidase IX 81.94% 96.95%
CHEMBL4630 O14757 Serine/threonine-protein kinase Chk1 81.58% 97.03%
CHEMBL1293249 Q13887 Kruppel-like factor 5 81.14% 86.33%
CHEMBL1075094 Q16236 Nuclear factor erythroid 2-related factor 2 81.04% 96.00%
CHEMBL3004 P33527 Multidrug resistance-associated protein 1 80.61% 96.37%

Plants that contains it

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Below are displayed all the plants proven (via scientific papers) to contain this compound!
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There are no matching plants.

Cross-Links

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PubChem 16131401
LOTUS LTS0007268
wikiData Q105373775